マクロジェンは、様々なシーケンシングプラットフォームに特化した解析ソフトウェアを利用して、 Standard Data Report と解析結果を提供します。 専門の解析サービスチームがお客様の多様なニーズに対応するカスタム解析も提供できます。また、遺伝変異の確認から比較解析に至るまで、付加的な解析を行っています。
Sequence
Methodology |
Sequence
Only |
Standard Analysis |
Special Analysis |
De novo
Sequencing |
FASTQ |
De novo assembly |
1. Variant Calling (SNP, In/Del)
2. Gene Prediction
3. Gene Annotation
|
Whole
Genome
Resequencing |
FASTQ |
1.Alignment and summary of data production
2.Variant Calling (SNP, In/Del) and Annotation
|
1.Comparative Analysis
2.Disease Analysis
3.Structural Variation (CNV and SV) and Annotation
|
Exome /Target
Sequencing |
FASTQ |
1.Alignment and summary of data production
2.Variant Calling (SNP, In/Del) and Annotation |
1.Comparative Analysis
2.Disease Analysis |
Transcriptome
Resequencing |
FASTQ |
1.Expression Profiles
2.Differentially Expressed Genes (DEGs)
3.Fusion Gene |
1.Gene Set Analysis
2.Variant Calling and Annotation
3.Comparative Analysis |
Transcriptome
De Novo
Sequencing |
FASTQ |
1.De novo Assembly
2.Alignment and Statistics
3.Expression Profiling |
1.Gene Annotation
2.Gene Set Analysis
3.Variant Calling (SNP, In/Del) and Annotation |
smRNA
Sequencing |
FASTQ |
1.Expression Profiles
2.Novel smRNA
3.Differentially Expressed miRNA |
1.Target Prediction of Known and Novel miRNA
2.Gene Set Analysis
3.Comparative Analysis |
Metagenome
16s rDNA
Sequencing |
FASTQ |
1.OTU Counting
2.OTU Diversity |
Comparative Analysis |
Metagenome
Shotgun
Sequencing |
FASTQ |
1.De novo assembly
2.Blastx |
1.Gene Prediction
2.OTU counting (16S rDNA or other
housekeeping genes)
3.Function assignment to each gene candidate
4.Constructing metabolic pathways
5.Statistical analysis of two or more
meta-genomic samples
|
ChIP
Sequencing |
FASTQ |
1.Enrichment Peak Profiles and Gene Annotation
2.Differentially Enriched Peaks and Gene Annotation
3.Multiple Alignment and Consensus Motif
|
1.Gene Set Analysis
2.Comparative Analysis
|
MBD
Sequencing |
FASTQ |
1.Global Methylation Profiles
2.Specific Methylation Profiles
- Protein-Coding Genes
- CG Islands
- Several Repeated Sequences
3. Differentially Methylation Regions (DMR)
|
1.DMR-Associated Genes
2.Gene Set Analysis
3.Comparative Analysis
|
MACROGEN USA